Genomics in equine veterinary medicine

Veterinary medicine is marching forward with genomics grasped firmly in one fist. Genomics has been part of our veterinary tool bag for some time in various guises, but the breadth and depth of its ramifications can be daunting. This article is designed to provide toe‐holds for veterinarians to enjoy a better understanding of genomics – a truly fascinating area of science.     

Management strategies for forage rape (Brassica napus L. cv Goliath): Impact on dry-matter yield,plant reserves,morphology and nutritive value

Limited information is available on the grazing management principles of forage rape (Brassica napus L.), particularly in relation to grazing height and intensity and the impact of these on dry-matter (DM) yield and nutritive value. A glasshouse study was undertaken to investigate the effect of three defoliation heights (plant height at harvest; DH: 40, 70 and 90 cm; L, M and H DH respectively) and three defoliation intensities (height at which plants were cut; DI: 5, 20 and 35 cm of residual height; H, M and L DI respectively) on forage rape (cv Goliath) yield and nutritive value at two harvests (harvest 1, H1 and harvest 2, H2), and the impact of nitrogen (N) and water soluble carbohydrate (WSC) reserves on regrowth. Increasing DH from L to H increased estimated total DM yield (H1 plus H2) from 0.5 to 4.6 t DM/ha but DI did not affect yield. Dry-matter yield was optimized at 90 cm DH, but greater nutritive value was achieved by harvesting at lower levels of DH. Despite high in vitro DM digestibility (IVDMD; 852–889 g/kg), harvesting at 90 cm DH could not meet the protein requirement of lactating dairy cows and harvesting at lower levels risks nitrate poisoning. Our results indicate the optimum DH may be between 70 and 90 cm DH, and 20 and 35 cm DI, which requires further studies.     

Evaluation of Cold Tolerance in NERICAs Compared with Japanese Standard Rice Varieties at the Reproductive Stage

New Rice for Africa (NERICA) is a general name for interspecific rice varieties derived from a cross between the high‐yielding Asian rice (Oryza sativa L.) between locally adapted African rice (Oryza glaberrima Steud.). Eight NERICAs were evaluated for cold tolerance (CT) at the reproductive stage and compared with their O. sativa parents and three Japanese standard rice varieties over 3 years. Cold tolerance was evaluated based on the filled grain ratio (FGR) after cold water irrigation. The FGR was greatly reduced by cold water irrigation. NERICA 1, 2 and 7 had higher FGR (51.9–57.9 %), while NERICA 6, 15 and 16 had lower FGR (6.2–14.5 %). NERICA 1, 2 and 7 were less affected by cold stress, with a 31 % mean reduction in FGR, while NERICA 6, 15 and 16 were greatly affected, with their FGRs being reduced by more than 80 %. NERICA 3 and 4 were moderately affected by cold stress, with about 45 % reduction rate in FGR. FGR significantly influenced the grain weights of the varieties with strong positive correlations (r = 0.83–0.91; P < 0.001), and thus, similar trends in grain weights were observed. Grain weights were reduced by 61.7–96.4 % under cold stress. NERICA 1, 2 and 7 showed significantly better performance than NERICA 3 and 4, while NERICA 6, 15 and 16 performed poorly under cold water irrigation. The Japanese varieties Koshihikari (very tolerant) and Ozora (moderately tolerant) were more affected by cold water irrigation than NERICA 1, 2 and 7. On the basis of the mean reduction rate (%) in FGR under cold stress, the varieties were classified as follows: NERICA 1, 2 and 7 as tolerant; NERICA 3 and 4 as moderately tolerant; and NERICA 6, 15 and 16 as susceptible to cold stress. However, NERICA 7 grain yields were lower under cold stress due to both greatly reduced number of panicles per plant and number of spikelets per panicle. Therefore, NERICA 1 and 2 are suitable candidates for production in the highland regions of East Africa and should be promoted for production.     

Black carbon estimation in French calcareous soils using chemo‐thermal oxidation method

We studied the black carbon (BC) content of ca. 405 samples from French topsoil and artificial soil and carbonate mixtures. Our protocol involved three main steps: (i) decarbonation by HCl, (ii) elimination of non‐pyrogenic organic carbon in a furnace at 375 °C, and (iii) quantification of residual carbon by CHN analysis. BC content increased for calcareous soils according to their carbonates content. Subsequent analyses confirmed the existence of a methodological artefact for BC determination only in calcareous soils. Decarbonation changes the thermal properties of organic matter, creating more recalcitrant carbon than in the initial sample. Higher CaCO₃ and organic carbon content results in a more pronounced artefact. The reversal of the first two steps of the chemo‐thermal oxidation method (i.e. thermal oxidation before soil decarbonation) eliminates this artefact. Overall, our results suggest that BC content may have been overestimated in a large number of studies on calcareous soils.     

The Situation for Quinoa and Its Production in Southern Bolivia: From Economic Success to Environmental Disaster

In Bolivia, one of the world’s most important centres of plant domestication, there is growing awareness of the value of native Andean crops, both for domestic consumption and for market sale – notably the virtually boom‐like consumer demand for quinoa around the world. The southern altiplano of Bolivia, south of Oruro, relies almost purely on the production of quinoa and breeding of llamas, which have also been selected as the two commodities of priority to the government to increase the income of the country. Presently, however, quinoa is facing increasing problems in production, owing to its increasing export market and price. The flat areas around the salt desert of the southern altiplano, previously characterized by natural vegetation fed by the llamas, are being increasingly sown with quinoa, hence transformed into deserts, because intensive cultivation methods make the soil loose its fertility. Possible solutions to these problems will require extensive efforts in the south, in addition to various strategies, which also include other parts of the Bolivian altiplano and a strengthened focus on other Andean crops.     

Development of multiple cutaneous and follicular neoplasms associated with canine papillomavirus type 3 in a dog

A 12‐year‐old spayed English pointer dog developed multiple skin lesions including pigmented viral plaques, basal cell carcinomas, squamous cell carcinomas and trichoblastomas. Canine papillomavirus type 3 was detected in multiple lesions suggesting common aetiology.

     

Characterization of resistance to the wheat stem sawfly in spring wheat landrace accessions from targeted geographic regions of the world

Plant landraces have long been recognized as potential gene pools for biotic and abiotic stress-related genes. This research used spring wheat landrace accessions to identify new sources of resistance to the wheat stem sawfly (WSS) (Cephus cinctus Norton), an important insect pest of wheat in the northern Great Plains of North America. Screening efforts targeted 1409 accessions from six geographical areas of the world where other species of grain sawflies are endemic or where a high frequency of accessions possesses the resistance characteristic of solid stems. Resistance was observed in approximately 14% of accessions. Half of the lines displayed both antixenosis and antibiosis types of resistance. Among the resistant accessions, 41% had solid or semi-solid stems. Molecular genetic screening for haplotypes at the solid stem QTL, Qss.msub.3BL, showed that 15% of lines shared the haplotype derived from ‘S-615’, the original donor of the solid stem trait to North American germplasm. Other haplotypes associated with solid stems were also observed. Haplotype diversity was greater in the center of origin of wheat. Evaluation of a representative set of resistant landrace accessions in replicated field trials at four locations over a three year period identified accessions with potential genes for reduced WSS infestation, increased WSS mortality, and increased indirect defense via parasitoids. Exploitation of distinct types of plant defense will expand the genetic diversity for WSS resistance currently present in elite breeding lines.     

Properties of morphogenesis of functional groups and particular skeletal muscles in red steppe young stock under Southern Urals conditions

The materials for studying the development of muscle tissue and particular skeletal muscles at the anatomical regions of the body in the red steppe young stock are presented in comparative aspects. Agerelated changes in the muscle tissue growth rates in different periods of rearing and fattening the animals were caused by both the unequal intensities of its development in different body parts and the increasing process of lipogenesis associated with aging.     

First report of Thrips setosus in Belgium

The Japanese flower thrips, Thrips setosus, is a polyphagous insect which in Europe has mainly been observed on hydrangeas (Hydrangea spp.). The first report of T. setosus in the EPPO region was in the Netherlands (2014). Since then it has been observed in four other countries inside the EPPO region: Germany (2015), the United Kingdom (2016), France (2016) and Croatia (2016). Its dispersal is most likely to be related to trade. Because of its polyphagous nature, there is a risk of spread to other economically important crops. Therefore, T. setosus was included in the national survey project ‘STATREGO’, during which the status of several invasive plant pests and diseases in Belgium was determined.